Coin de Gamma
6 years ago
2 changed files with 247 additions and 15 deletions
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// import pandas as pd
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// import os, re
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// import numpy as np
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// from urllib.parse import urlencode, urlparse
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// import urllib.request
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// import json
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// from time import time
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// from config import HASTIC_API_KEY
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// MS_IN_WEEK = 604800000
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// class GrafanaDataProvider:
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// chunk_size = 50000
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// def __init__(self, datasource, target, data_filename):
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// self.datasource = datasource
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// self.target = target
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// self.data_filename = data_filename
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// self.last_time = None
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// self.total_size = 0
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// self.last_chunk_index = 0
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// self.chunk_last_times = {}
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// self.__init_chunks()
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// self.synchronize()
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// def get_dataframe(self, after_time=None):
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// result = pd.DataFrame()
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// for chunk_index, last_chunk_time in self.chunk_last_times.items():
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// if after_time is None or after_time <= last_chunk_time:
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// chunk = self.__load_chunk(chunk_index)
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// if after_time is not None:
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// chunk = chunk[chunk['timestamp'] >= after_time]
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// result = pd.concat([result, chunk])
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// return result
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// def get_upper_bound(self, after_time):
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// for chunk_index, last_chunk_time in self.chunk_last_times.items():
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// if after_time < last_chunk_time:
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// chunk = self.__load_chunk(chunk_index)
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// chunk = chunk[chunk['timestamp'] >= after_time]
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// return chunk.index[0]
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// return self.size()
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// def size(self):
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// return self.total_size
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// def get_data_range(self, start_index, stop_index=None):
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// return self.__get_data(start_index, stop_index)
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// def transform_anomalies(self, anomalies):
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// result = []
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// if len(anomalies) == 0:
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// return result
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// dataframe = self.get_dataframe(None)
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// for anomaly in anomalies:
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// start_time = pd.to_datetime(anomaly['start'] - 1, unit='ms')
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// finish_time = pd.to_datetime(anomaly['finish'] + 1, unit='ms')
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// current_index = (dataframe['timestamp'] >= start_time) & (dataframe['timestamp'] <= finish_time)
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// anomaly_frame = dataframe[current_index]
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// if anomaly_frame.empty:
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// continue
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// cur_anomaly = {
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// 'start': anomaly_frame.index[0],
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// 'finish': anomaly_frame.index[len(anomaly_frame) - 1],
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// 'labeled': anomaly['labeled']
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// }
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// result.append(cur_anomaly)
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// return result
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// def inverse_transform_indexes(self, indexes):
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// if len(indexes) == 0:
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// return []
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// dataframe = self.get_data_range(indexes[0][0], indexes[-1][1] + 1)
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// return [(dataframe['timestamp'][i1], dataframe['timestamp'][i2]) for (i1, i2) in indexes]
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// def synchronize(self):
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// append_dataframe = self.load_from_db(self.last_time)
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// self.__append_data(append_dataframe)
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// def custom_query(self, after_time, before_time = None):
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// if self.datasource['type'] == 'influxdb':
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// query = self.datasource['params']['q']
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// if after_time is not None:
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// if before_time is not None:
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// timeFilter = 'time >= %s AND time <= %s' % (after_time, before_time)
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// else:
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// timeFilter = 'time >= "%s"' % (str(after_time))
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// else:
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// timeFilter = 'time > 0ms'
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// query = re.sub(r'(?:time >.+?)(GROUP.+)*$', timeFilter + r' \1', query)
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// return query
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// else:
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// raise 'Datasource type ' + self.datasource['type'] + ' is not supported yet'
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// def load_from_db(self, after_time=None):
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// result = self.__load_data_chunks(after_time)
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// if result == None or len(result['values']) == 0:
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// dataframe = pd.DataFrame([])
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// else:
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// dataframe = pd.DataFrame(result['values'], columns = result['columns'])
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// cols = dataframe.columns.tolist()
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// cols.remove('time')
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// cols = ['time'] + cols
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// dataframe = dataframe[cols]
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// dataframe['time'] = pd.to_datetime(dataframe['time'], unit='ms')
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// dataframe = dataframe.dropna(axis=0, how='any')
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// return dataframe
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// def __load_data_chunks(self, after_time = None):
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// params = self.datasource['params']
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// if after_time == None:
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// res = {
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// 'columns': [],
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// 'values': []
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// }
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// after_time = int(time() * 1000 - MS_IN_WEEK)
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// before_time = int(time() * 1000)
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// while True:
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// params['q'] = self.custom_query(str(after_time) + 'ms', str(before_time) + 'ms')
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// serie = self.__query_grafana(params)
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// if serie != None:
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// res['columns'] = serie['columns']
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// res['values'] += serie['values']
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// after_time -= MS_IN_WEEK
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// before_time -= MS_IN_WEEK
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// else:
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// return res
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// else:
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// params['q'] = self.custom_query(str(after_time))
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// return self.__query_grafana(params)
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// def __query_grafana(self, params):
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// headers = { 'Authorization': 'Bearer ' + HASTIC_API_KEY }
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// url = self.datasource['origin'] + '/' + self.datasource['url'] + '?' + urlencode(params)
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// req = urllib.request.Request(url, headers=headers)
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// with urllib.request.urlopen(req) as resp:
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// res = json.loads(resp.read().decode('utf-8'))['results'][0]
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// if 'series' in res:
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// return res['series'][0]
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// else:
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// return None
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// def __init_chunks(self):
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// chunk_index = 0
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// self.last_chunk_index = 0
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// while True:
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// filename = self.data_filename
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// if chunk_index > 0:
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// filename += "." + str(chunk_index)
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// if os.path.exists(filename):
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// self.last_chunk_index = chunk_index
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// chunk = self.__load_chunk(chunk_index)
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// chunk_last_time = chunk.iloc[len(chunk) - 1]['timestamp']
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// self.chunk_last_times[chunk_index] = chunk_last_time
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// self.last_time = chunk_last_time
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// else:
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// break
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// chunk_index += 1
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// self.total_size = self.last_chunk_index * self.chunk_size
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// last_chunk = self.__load_chunk(self.last_chunk_index)
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// self.total_size += len(last_chunk)
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// def __load_chunk(self, index):
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// filename = self.data_filename
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// if index > 0:
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// filename += "." + str(index)
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// if os.path.exists(filename):
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// chunk = pd.read_csv(filename, parse_dates=[0])
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// frame_index = np.arange(index * self.chunk_size, index * self.chunk_size + len(chunk))
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// chunk = chunk.set_index(frame_index)
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// return chunk.rename(columns={chunk.columns[0]: "timestamp", chunk.columns[1]: "value"})
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// return pd.DataFrame()
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// def __save_chunk(self, index, dataframe):
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// filename = self.data_filename
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// if index > 0:
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// filename += "." + str(index)
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// chunk_last_time = dataframe.iloc[len(dataframe) - 1]['time']
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// self.chunk_last_times[index] = chunk_last_time
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// if os.path.exists(filename):
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// dataframe.to_csv(filename, mode='a', index=False, header=False)
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// else:
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// dataframe.to_csv(filename, mode='w', index=False, header=True)
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// def __append_data(self, dataframe):
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// while len(dataframe) > 0:
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// chunk = self.__load_chunk(self.last_chunk_index)
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// rows_count = min(self.chunk_size - len(chunk), len(dataframe))
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// rows = dataframe.iloc[0:rows_count]
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// if len(rows) > 0:
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// self.__save_chunk(self.last_chunk_index, rows)
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// self.total_size += rows_count
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// self.last_time = rows.iloc[-1]['time']
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// dataframe = dataframe[rows_count:]
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// if len(dataframe) > 0:
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// self.last_chunk_index += 1
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// def __get_data(self, start_index, stop_index):
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// result = pd.DataFrame()
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// start_chunk = start_index // self.chunk_size
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// finish_chunk = self.last_chunk_index
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// if stop_index is not None:
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// finish_chunk = stop_index // self.chunk_size
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// for chunk_num in range(start_chunk, finish_chunk + 1):
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// chunk = self.__load_chunk(chunk_num)
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// if stop_index is not None and chunk_num == finish_chunk:
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// chunk = chunk[:stop_index % self.chunk_size]
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// if chunk_num == start_chunk:
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// chunk = chunk[start_index % self.chunk_size:]
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// result = pd.concat([result, chunk])
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// return result
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